The Manual Draft Assistant can either assign players to teams based on draft order or based on which team you assign a specific player to. The Manual Draft Assistant never randomly assigns players to teams. It's always up to the user to make sure that they are selecting the right players for the right teams or vice versa.
There are three different ways to assign players to teams in the Manual Draft Assistant:
1. Click on the empty space beneath the team you want to assign a player to in the Draft Log pane.
2a. Click on the "Mark As Drafted" button for any suggested players.
2b. Move your cursor to the player you want to select on your cheat sheet, click on the drop-down arrow, and click on "Mark as Drafted."
2c. Type in a player name in the "Mark another player as drafted" box in the top left. Click that player's name to mark him as drafted.
3. Once either of the above methods has been taken to mark a player as drafted, that player will populate in the corresponding box for that team in the Draft Log. Marking other players as drafted will now automatically place them on the team with the next pick that has not been assigned to a player yet.